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Brain Windows

New tools for peering into the brain...
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Endogenous Dark Chromophore Imaging via Modulated Stimulated Emission

Nov 11, 2009
Here is an interesting paper, Imaging chromophores with undetectable fluorescence by stimulated emission microscopy, from Sunny Xie’s group.  They pump the sample with a excitation laser while simultaneously hitting it with a longer wavelength laser...

Three Cheers for GCaMP : Optogenetic Brain Reading

Nov 9, 2009
Three papers are out online in Nature Methods that show big improvements in calcium imaging with genetically encoded sensors.  They are are based on the fluorescence intensity indicator, GCaMP.   GCaMP, first developed by Junichi Nakai, consists of...

Playing Quake with a Real Mouse

Oct 14, 2009
Most people play Quake with a computer mouse, but researchers in David Tank’s lab at Princeton have done it with a living mouse, AND they are recording the intracellular activity of individual neurons of the mouse during the gaming session. As reported...

Automated ROI analysis for calcium imaging

Oct 2, 2009
One of the most time consuming and frustrating tasks associated with fluorescence imaging in the brain is picking out your regions of interest.  Which pixels do you include in as part of the cell and which are part of the surrounding neuropil?...

Optogenetic induction of memory recall

Sep 18, 2009
Speaking of reactivating specific memories, at the 2009 Society for Neuroscience meeting, Matteo Rizzi of Michael Häusser’s lab is presenting the realization of an idea that has been floating around in some research proposals I’ve read over the last...


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